STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56795.1Transposase, IS630 family. (158 aa)    
Predicted Functional Partners:
CED56794.1
Transposase, IS630 family.
    0.950
CED70643.1
Transposase, IS630 family.
 
     0.787
CED72565.1
Transposase, IS630 family.
    0.786
CED56918.1
Putative HTH-type transcriptional regulator.
 
     0.742
CED70260.1
Putative exported protein.
  
     0.698
CED57924.1
Putative uncharacterized protein.
  
     0.695
CED57904.1
Putative exported MORN variant repeat protein.
  
     0.610
CED71213.1
Putative methyltransferase.
  
     0.555
CED57550.1
CRISPR-associated protein, Csy3.
   
   0.511
CED57292.1
Putative nucleotide-binding protein.
  
     0.503
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.