STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56809.1Putative membrane associated regulator, GGDEF family protein. (433 aa)    
Predicted Functional Partners:
CED57608.1
Putative membrane associated signaling protein.
    0.964
CED57803.1
Response regulator.
  
 
 0.928
CED57742.1
Membrane associated signaling protein.
 
 0.903
CED72408.1
Signaling protein.
 
 0.903
CED70186.1
Putative signal transduction protein.
 
  
 0.889
CED57793.1
Membrane associated signaling protein.
    0.887
CED57816.1
Putative signaling protein.
    0.874
mshH
Putative membrane associated signaling protein, MshH.
 
  
 0.862
CED56724.1
Putative bacterial signaling protein.
 
    0.856
CED57211.1
Putative signalling protein.
 
    0.854
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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