STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56815.1Putative heme binding protein. (178 aa)    
Predicted Functional Partners:
CED71914.1
Putative uncharacterized protein.
  
  
 0.913
CED56816.1
Sensor protein.
     
 0.761
CED70746.1
Membrane dipeptidase, M19 family.
  
  
 0.570
CED57766.1
Putative heparinase.
  
     0.546
CED56817.1
Putative regulator, GGDEF family protein.
       0.531
CED57765.1
Putative heparinase.
  
     0.530
CED56814.1
Putative regulator, GGDEF family protein.
  
  
 0.508
CED71361.1
Putative glyoxylase.
  
     0.469
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
    0.462
CED70186.1
Putative signal transduction protein.
 
  
 0.452
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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