STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED56818.1Extracellular serine protease, subtilase family; Belongs to the peptidase S8 family. (626 aa)    
Predicted Functional Partners:
CED56819.1
Putative exported protein.
   
   0.984
mshQ
MSHA biogenesis protein MshQ.
 
 
 0.905
CED56709.1
Putative uncharacterized protein.
  
 
 0.887
CED57798.1
Putative exported protein.
  
 
 0.887
mshQ-2
MSHA biogenesis protein MshQ.
  
 
 0.887
CED57580.1
Putative protein kinase.
   
 
 0.836
CED56788.1
RHS protein.
 
  
 0.711
chiA
Chitinase.
 
 
 
 0.649
CED57763.1
Putative exported alginate lyase.
  
  
 0.635
CED57916.1
Hemolysin-type calcium-binding protein.
  
  
 0.635
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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