STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56828.1Peptidase, family M3. (615 aa)    
Predicted Functional Partners:
CED56988.1
Putative exported protein.
  
     0.727
CED70673.1
Membrane protein.
  
     0.644
CED57773.1
Putative exported hemolysin.
  
     0.627
CED57455.1
Putative lipoprotein.
  
     0.616
CED70703.1
Putative uncharacterized protein.
  
     0.613
CED57430.1
Outer membrane protein, OmpA family.
  
     0.602
CED56989.1
TonB-dependent heme receptor.
  
     0.592
CED72389.1
O-antigen ligase.
 
     0.581
CED57427.1
Outer membrane protein, OmpA family.
  
     0.560
CED56820.1
Peptide transporter.
 
   
 0.549
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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