STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proWGlycine betaine/L-proline transport system permease protein ProW. (361 aa)    
Predicted Functional Partners:
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 0.998
proX
Glycine betaine-binding periplasmic protein.
 
 0.997
CED57850.1
ABC transporter, glycine betaine binding protein.
 
 0.996
CED57852.1
ABC transporter, ATP binding protein.
 0.995
CED57839.1
ABC-type glycine betaine transport system, substrate binding domain.
 
 
 0.978
CED57851.1
ABC transporter, permease.
  
  
 
0.910
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.442
CED56848.1
Methyl-accepting chemotaxis protein.
       0.410
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
   
    0.410
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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