STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proWGlycine betaine/L-proline transport system permease protein ProW. (361 aa)    
Predicted Functional Partners:
proX
Glycine betaine-binding periplasmic protein.
 
 0.998
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 
 0.998
CED57850.1
ABC transporter, glycine betaine binding protein.
 
 0.996
CED57852.1
ABC transporter, ATP binding protein.
 
 0.992
CED57839.1
ABC-type glycine betaine transport system, substrate binding domain.
 
 
 0.977
CED57851.1
ABC transporter, permease.
  
  
 
0.910
CED56896.1
ABC transporter, integral membrane protein.
     
 0.549
malF
Maltose/maltodextrin transporter, permease.
     
 0.549
ugpC
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
     
 0.541
CED56894.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
     
 0.541
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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