STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED56876.1Putative uncharacterized protein. (163 aa)    
Predicted Functional Partners:
CED72219.1
MazG protein.
    
  0.904
udk
Uridine kinase.
    
  0.903
CED56957.1
5'-nucleotidase.
    
  0.901
CED57064.1
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
    
  0.901
nutA
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
    
  0.901
nutA-2
5'-nucleotidase precursor; Belongs to the 5'-nucleotidase family.
    
  0.901
nrdD
Anaerobic ribonucleoside-triphosphate reductase.
     
  0.900
CED70671.1
Putative uncharacterized protein, lysine decarboxylase family.
     
  0.900
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.900
CED71050.1
5'-nucleotidase.
     
  0.900
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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