CED56880.1 protein (Aliivibrio wodanis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CED56880.1

UPF0082 protein. (240 aa)

Predicted Functional Partners:

rplS

0.850

rplQ

0.809

rpmA

0.784

rpmF

0.763

rpsP

0.755

rpsO

0.744

rplU

0.723

CED56879.1

0.710

rplM

0.703

rplT

0.676

Your Current Organism:

Aliivibrio wodanis

NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CED56879.1	CED56880.1	AWOD_II_0229	AWOD_II_0230	Putative uncharacterized protein.	UPF0082 protein.	0.710
CED56880.1	CED56879.1	AWOD_II_0230	AWOD_II_0229	UPF0082 protein.	Putative uncharacterized protein.	0.710
CED56880.1	rplM	AWOD_II_0230	AWOD_I_0377	UPF0082 protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.703
CED56880.1	rplQ	AWOD_II_0230	AWOD_I_2415	UPF0082 protein.	50S ribosomal protein L17.	0.809
CED56880.1	rplS	AWOD_II_0230	AWOD_I_0530	UPF0082 protein.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.850
CED56880.1	rplT	AWOD_II_0230	AWOD_I_1450	UPF0082 protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.676
CED56880.1	rplU	AWOD_II_0230	AWOD_I_2400	UPF0082 protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.723
CED56880.1	rpmA	AWOD_II_0230	AWOD_I_2399	UPF0082 protein.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.784
CED56880.1	rpmF	AWOD_II_0230	AWOD_I_1867	UPF0082 protein.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.763
CED56880.1	rpsO	AWOD_II_0230	AWOD_I_0482	UPF0082 protein.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.744
CED56880.1	rpsP	AWOD_II_0230	AWOD_I_0527	UPF0082 protein.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.755
rplM	CED56880.1	AWOD_I_0377	AWOD_II_0230	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	UPF0082 protein.	0.703
rplM	rplQ	AWOD_I_0377	AWOD_I_2415	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L17.	0.997
rplM	rplS	AWOD_I_0377	AWOD_I_0530	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplM	rplT	AWOD_I_0377	AWOD_I_1450	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.998
rplM	rplU	AWOD_I_0377	AWOD_I_2400	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rpmA	AWOD_I_0377	AWOD_I_2399	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplM	rpmF	AWOD_I_0377	AWOD_I_1867	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rplM	rpsO	AWOD_I_0377	AWOD_I_0482	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rplM	rpsP	AWOD_I_0377	AWOD_I_0527	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.996

page 1 of 5

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About