STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56886.1Integral membrane protein. (307 aa)    
Predicted Functional Partners:
CED56887.1
Membrane protein.
 
  
 0.965
hflB
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.885
CED72310.1
Putative uncharacterized protein; Belongs to the UPF0301 (AlgH) family.
  
    0.467
CED56885.1
Putative membrane associated regulator, GGDEF family protein.
  
    0.449
CED71387.1
Putative acetyltransferase, (GNAT) domain.
  
    0.436
CED72283.1
Putative bacterial type II secretion system protein.
   
    0.430
gltB
Glutamate synthase, large subunit.
     
 0.415
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
  
   
0.413
CED57517.1
Response regulator.
  
    0.409
CED71284.1
Putative response regulator.
  
    0.409
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.