STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56887.1Membrane protein. (150 aa)    
Predicted Functional Partners:
CED56886.1
Integral membrane protein.
 
  
 0.965
CED71158.1
Membrane protein.
  
  
 0.671
CED71159.1
Integral membrane protein, Band 7 protein.
  
  
 0.671
hflC
HflC protein; HflC and HflK could regulate a protease.
 
  
 0.487
CED71303.1
Membrane protein.
   
    0.463
CED71986.1
Putative uncharacterized protein, HIT family.
 
   
 0.459
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
 
  
 0.453
CED71331.1
Sensor protein, histidine kinase.
  
    0.446
CED56885.1
Putative membrane associated regulator, GGDEF family protein.
  
    0.443
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
   
    0.433
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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