STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56901.1Secreted endonuclease. (1061 aa)    
Predicted Functional Partners:
CED56900.1
Membrane protein.
       0.711
CED56902.1
Putative exported protein.
 
    
0.569
CED56903.1
Secreted endonuclease I.
   
 0.562
hcp-3
Hemolysin-coregulated protein Hcp-3.
  
     0.517
CED57651.1
Putative uncharacterized protein.
  
     0.517
CED56906.1
Secreted peptidase, family C25.
  
     0.474
CED56721.1
Putative uncharacterized protein.
  
     0.465
exeN
General secretion pathway protein N.
  
     0.459
CED70676.1
Putative uncharacterized protein.
  
     0.457
CED71256.1
Putative uncharacterized protein.
  
     0.457
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.