STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
torAtrimethylamine-N-oxide reductase precursor. (820 aa)    
Predicted Functional Partners:
CED56961.1
Cytochrome c-type protein; Belongs to the TorC/TorY family.
 
 0.997
torD
Chaperone protein TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
 
 0.991
CED57738.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.902
nrfC
Cytochrome c-type biogenesis protein NrfC.
 
 
 0.877
fdhB
Formate dehydrogenase iron-sulfur subunit.
 
 
 0.852
CED57739.1
Polysulphide reductase, NrfD.
 
 
 0.849
napD
NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
 
 
 0.809
napC
Periplasmic nitrate reductase NapC.
 
 
 0.762
CED71353.1
Putative ferredoxin.
  
 
 0.761
CED56960.1
Putative periplasmic nitrate reductase protein NapE.
  
  
 0.731
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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