STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapFPeptide transport system ATP-binding protein SapF. (274 aa)    
Predicted Functional Partners:
sapC
Peptide transport system permease protein SapC.
 
 0.998
sapB
Peptide transport system permease protein SapB.
 
  
 0.975
sapA
Peptide transport periplasmic protein precursor SapA.
 
   
 0.952
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
  
0.950
CED72636.1
Peptide ABC transporter, permease protein.
 
     0.881
oppC
Oligopeptide transport system permease protein C.
 
     0.861
CED70548.1
(GlcNAc)2 ABC transporter, permease.
 
     0.837
oppB
Oligopeptide ABC transporter, permease protein B.
 
     0.758
CED70549.1
(GlcNAc)2 ABC transporter, permease.
 
     0.755
yejB
Putative oligopeptide transport system, inner-membrane oligopeptide-binding protein.
  
   
 0.731
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.