STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapAPeptide transport periplasmic protein precursor SapA. (541 aa)    
Predicted Functional Partners:
sapB
Peptide transport system permease protein SapB.
  
 0.995
sapC
Peptide transport system permease protein SapC.
 
  
 0.961
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
  
 0.948
sapF
Peptide transport system ATP-binding protein SapF.
 
   
 0.936
oppB
Oligopeptide ABC transporter, permease protein B.
 
 0.821
oppC
Oligopeptide transport system permease protein C.
 
 
 0.797
CED72636.1
Peptide ABC transporter, permease protein.
 
 0.697
CED72637.1
Peptide ABC transporter, permease protein.
 
 0.690
CED70549.1
(GlcNAc)2 ABC transporter, permease.
 
 0.685
CED70548.1
(GlcNAc)2 ABC transporter, permease.
 
 
 0.662
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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