sapA protein (Aliivibrio wodanis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sapA

Peptide transport periplasmic protein precursor SapA. (541 aa)

Predicted Functional Partners:

sapB

0.996

sapC

0.971

sapD

0.962

sapF

0.952

oppB

0.904

oppC

0.885

CED72637.1

0.834

CED70549.1

0.832

CED72636.1

0.828

CED70548.1

0.808

Your Current Organism:

Aliivibrio wodanis

NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CED70548.1	CED70549.1	AWOD_I_0454	AWOD_I_0455	(GlcNAc)2 ABC transporter, permease.	(GlcNAc)2 ABC transporter, permease.	0.993
CED70548.1	CED72637.1	AWOD_I_0454	AWOD_I_2586	(GlcNAc)2 ABC transporter, permease.	Peptide ABC transporter, permease protein.	0.951
CED70548.1	oppB	AWOD_I_0454	AWOD_I_1701	(GlcNAc)2 ABC transporter, permease.	Oligopeptide ABC transporter, permease protein B.	0.956
CED70548.1	sapA	AWOD_I_0454	AWOD_II_0321	(GlcNAc)2 ABC transporter, permease.	Peptide transport periplasmic protein precursor SapA.	0.808
CED70548.1	sapB	AWOD_I_0454	AWOD_II_0320	(GlcNAc)2 ABC transporter, permease.	Peptide transport system permease protein SapB.	0.763
CED70548.1	sapD	AWOD_I_0454	AWOD_II_0318	(GlcNAc)2 ABC transporter, permease.	Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.	0.854
CED70548.1	sapF	AWOD_I_0454	AWOD_II_0317	(GlcNAc)2 ABC transporter, permease.	Peptide transport system ATP-binding protein SapF.	0.837
CED70549.1	CED70548.1	AWOD_I_0455	AWOD_I_0454	(GlcNAc)2 ABC transporter, permease.	(GlcNAc)2 ABC transporter, permease.	0.993
CED70549.1	CED72636.1	AWOD_I_0455	AWOD_I_2585	(GlcNAc)2 ABC transporter, permease.	Peptide ABC transporter, permease protein.	0.954
CED70549.1	oppC	AWOD_I_0455	AWOD_I_1700	(GlcNAc)2 ABC transporter, permease.	Oligopeptide transport system permease protein C.	0.953
CED70549.1	sapA	AWOD_I_0455	AWOD_II_0321	(GlcNAc)2 ABC transporter, permease.	Peptide transport periplasmic protein precursor SapA.	0.832
CED70549.1	sapC	AWOD_I_0455	AWOD_II_0319	(GlcNAc)2 ABC transporter, permease.	Peptide transport system permease protein SapC.	0.774
CED70549.1	sapD	AWOD_I_0455	AWOD_II_0318	(GlcNAc)2 ABC transporter, permease.	Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.	0.766
CED70549.1	sapF	AWOD_I_0455	AWOD_II_0317	(GlcNAc)2 ABC transporter, permease.	Peptide transport system ATP-binding protein SapF.	0.755
CED72636.1	CED70549.1	AWOD_I_2585	AWOD_I_0455	Peptide ABC transporter, permease protein.	(GlcNAc)2 ABC transporter, permease.	0.954
CED72636.1	CED72637.1	AWOD_I_2585	AWOD_I_2586	Peptide ABC transporter, permease protein.	Peptide ABC transporter, permease protein.	0.992
CED72636.1	oppB	AWOD_I_2585	AWOD_I_1701	Peptide ABC transporter, permease protein.	Oligopeptide ABC transporter, permease protein B.	0.955
CED72636.1	sapA	AWOD_I_2585	AWOD_II_0321	Peptide ABC transporter, permease protein.	Peptide transport periplasmic protein precursor SapA.	0.828
CED72636.1	sapD	AWOD_I_2585	AWOD_II_0318	Peptide ABC transporter, permease protein.	Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.	0.928
CED72636.1	sapF	AWOD_I_2585	AWOD_II_0317	Peptide ABC transporter, permease protein.	Peptide transport system ATP-binding protein SapF.	0.881

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About