STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56978.1Putative membrane associated regulator, GGDEF family protein. (928 aa)    
Predicted Functional Partners:
CED57803.1
Response regulator.
  
 
 0.950
CED71636.1
Sensor protein, GGDEF family.
 
0.912
CED56977.1
Putative membrane associated regulator, GGDEF family protein.
 
   0.896
CED56834.1
Putative regulator, GGDEF family protein.
 
  
 0.893
CED71277.1
GGDEF family protein.
 
  
 0.893
CED56814.1
Putative regulator, GGDEF family protein.
 
  
 0.892
CED56817.1
Putative regulator, GGDEF family protein.
 
 0.871
arcB
Sensor protein.
 
 
 0.869
CED71496.1
Putative response regulator.
 
 
 0.844
luxU
Phosphorelay protein LuxU.
  
  
 0.843
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.