STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED56980.1Putative suppressor for copper-sensitivity D. (178 aa)    
Predicted Functional Partners:
CED56979.1
Putative suppressor for copper-sensitivity C precursor.
 
   
 0.900
CED56981.1
Putative suppressor for copper-sensitivity B precursor.
 
 
 
 0.881
trxB
Thioredoxin reductase.
  
 
 0.689
groL1
60 kda chaperonin 1; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
 
 0.682
CED56982.1
Membrane protein.
       0.658
nrdA
Ribonucleoside-diphosphate reductase 1 alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
 
 
 0.620
nrdB
Ribonucleoside-diphosphate reductase 1 beta chain.
 
 
 0.620
gltB
Glutamate synthase, large subunit.
   
 
 0.615
CED56788.1
RHS protein.
  
 
   0.599
CED56792.1
RHS protein; Lack of similarity at the C-terminus in comparison to other proteins.
  
 
   0.576
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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