STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56997.1Amino acid permease. (475 aa)    
Predicted Functional Partners:
alaE
Membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.610
ebgA
Beta-galactosidase, subunit alpha.
 
   
 0.588
gltB
Glutamate synthase, large subunit.
  
  
 0.586
CED56714.1
Putative lipoprotein.
 
     0.585
CED56994.1
Putative lipoprotein.
 
     0.568
trpC
Tryptophan biosynthesis protein TrpCF.
   
 
 0.536
CED56717.1
Transporter, MFS family.
  
 
 
 0.532
ebgC
Beta-galactosidase, subunit beta.
     
 0.526
nplT
Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
    
 0.520
treA
Trehalose-6-phosphate hydrolase.
    
 0.520
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.