STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57022.1Putative HTH-type regulatory protein, AraC family. (285 aa)    
Predicted Functional Partners:
CED57561.1
HTH-type transcriptional regulator, AraC-family.
  
     0.750
CED56763.1
Transcriptional regulator, AraC family.
  
     0.689
CED57588.1
HTH-type transcriptional regulator, AraC-family.
 
     0.671
CED57217.1
HTH-type transcriptional regulator, AraC family.
  
     0.665
CED71142.1
Transcriptional regulator, AraC-family.
  
     0.624
CED70891.1
Transcriptional regulator, AraC family.
  
     0.621
CED71860.1
Transcriptional regulator, AraC-family.
  
     0.610
CED72074.1
Putative exported protein.
  
     0.548
CED57021.1
PTS system, IIBC component.
   
 
 0.524
CED71606.1
HTH-type transcriptional regulator, AraC family.
  
     0.517
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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