STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57034.1Phage integrase; Belongs to the 'phage' integrase family. (427 aa)    
Predicted Functional Partners:
parB
Chromosome plasmid partition protein; Belongs to the ParB family.
  
  
 0.601
CED57722.1
Putative nuclease.
  
     0.573
CED71683.1
Putative exported protein.
  
     0.572
CED70970.1
Putative uncharacterized protein.
  
     0.565
CED71817.1
Putative uncharacterized protein.
  
     0.564
CED72072.1
Putative porin.
  
     0.557
pvsC
Multi-drug efflux pump homolog PvsC.
  
     0.526
gpt
Xanthine phosphoribosyltransferase (xanthine-guanin phosphoribosyltransferase); Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
  
 0.523
CED70673.1
Membrane protein.
  
     0.489
CED71730.1
Putative lipoprotein.
  
     0.485
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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