STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57035.1Transporter, extracellular solute-binding proteins, family 3. (1056 aa)    
Predicted Functional Partners:
CED71636.1
Sensor protein, GGDEF family.
   
 
 0.652
gltB
Glutamate synthase, large subunit.
     
 0.628
vtsD
Putative type VI secretion protein, periplasmic solute-binding protein VtsD.
  
     0.545
CED70191.1
Putative signal transduction protein, GGDEF family.
 
 
 0.536
CED57517.1
Response regulator.
   
   0.532
CED71284.1
Putative response regulator.
   
   0.532
luxU
Phosphorelay protein LuxU.
   
 
 0.507
CED57036.1
Transporter, extracellular solute-binding proteins, family 3.
 
    
0.492
arcB
Sensor protein.
   
 
 0.475
CED56884.1
Putative uncharacterized protein.
 
   
 0.470
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.