STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57036.1Transporter, extracellular solute-binding proteins, family 3. (1056 aa)    
Predicted Functional Partners:
CED71636.1
Sensor protein, GGDEF family.
   
 
 0.652
gltB
Glutamate synthase, large subunit.
     
 0.628
vtsD
Putative type VI secretion protein, periplasmic solute-binding protein VtsD.
  
     0.553
CED70191.1
Putative signal transduction protein, GGDEF family.
 
 
 0.540
CED57517.1
Response regulator.
   
   0.532
CED71284.1
Putative response regulator.
   
   0.532
CED57787.1
Response regulator.
 
  
 0.508
luxU
Phosphorelay protein LuxU.
   
 
 0.507
rhlE-2
ATP-dependent RNA helicase 1; Belongs to the DEAD box helicase family.
       0.497
CED57035.1
Transporter, extracellular solute-binding proteins, family 3.
 
    
0.492
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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