STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57062.1Putative uncharacterized protein. (542 aa)    
Predicted Functional Partners:
CED71263.1
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.801
hsdS
Type-1 restriction enzyme EcoEI specificity protein.
  
  
 0.711
CED70734.1
Putative uncharacterized protein; Belongs to the UPF0253 family.
  
     0.691
CED72074.1
Putative exported protein.
  
     0.691
hsdM
Type I restriction enzyme EcoEI M protein.
  
  
 0.649
CED71259.1
Type I restriction-modification system, N-6 adenine-specific DNA methylase.
  
  
 0.649
CED71260.1
Type I restriction-modification system, DNA specificity domain.
  
    0.621
CED70804.1
Putative esterase; Belongs to the UPF0255 family.
  
     0.581
CED57713.1
Putative permease.
   
    0.564
CED57063.1
Two component transcriptional regulator.
       0.551
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.