STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57066.1Putative regulator, GGDEF family protein. (527 aa)    
Predicted Functional Partners:
CED57742.1
Membrane associated signaling protein.
 
 
 0.822
CED72408.1
Signaling protein.
 
 
 0.817
CED70186.1
Putative signal transduction protein.
 
   0.813
CED57067.1
Putative uncharacterized protein.
       0.811
CED57729.1
Signalling protein.
 
 
 0.810
CED70191.1
Putative signal transduction protein, GGDEF family.
 
   0.809
CED57063.1
Two component transcriptional regulator.
 
   0.806
CED71473.1
Response regulator receiver.
 
   0.805
CED57816.1
Putative signaling protein.
 
   0.804
CED57608.1
Putative membrane associated signaling protein.
    0.801
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.