STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57068.1HTH-type transcriptional regulator. (326 aa)    
Predicted Functional Partners:
CED57069.1
Putative DNA-binding protein.
       0.778
deoD
Purine nucleoside phosphorylase.
       0.632
mtlD
Mannitol-1-phosphate 5-dehydrogenase.
 
     0.502
CED57066.1
Putative regulator, GGDEF family protein.
       0.490
CED57067.1
Putative uncharacterized protein.
       0.490
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily.
     
 0.470
yeaD
Putative aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
  
    0.468
CED71636.1
Sensor protein, GGDEF family.
  
  
 0.438
CED71498.1
Membrane protein.
  
     0.428
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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