STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cIIPhage regulatory protein CII. (173 aa)    
Predicted Functional Partners:
CED57113.1
Phage replication protein.
  
    0.961
CED71536.1
Phage U-like protein.
   
    0.906
CED57108.1
Probable phage replication protein.
       0.815
CED57109.1
Putative uncharacterized phage protein.
       0.561
CED57106.1
Putative phage DNA-binding protein.
       0.500
CED57105.1
Putative uncharacterized phage protein.
  
    0.469
CED57110.1
Putative uncharacterized phage protein.
       0.467
CED71534.1
Phage late control gene D protein.
   
    0.454
CED71540.1
Phage tail sheath protein FI-like.
   
    0.453
CED71537.1
Phage-related tail protein.
   
    0.451
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.