STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treBPTS system, trehalose-specific EIIBC component. (474 aa)    
Predicted Functional Partners:
crr
Glucose-specific phosphotransferase enzyme IIA component (PTS system).
 0.999
treA
Trehalose-6-phosphate hydrolase.
 
 
 0.987
nagC
N-acetylglucosamine repressor.
  
 
 0.969
nagK
N-acetyl-d-glucosamine kinase; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.
  
 
 0.969
ptsH
Phosphocarrier protein Hpr, histidine-containing protein (PTS system).
  
 
 0.928
CED57707.1
PTS system, sucrose-specific EIIBC component.
 
 
0.920
CED57708.1
Glycosyl hydrolase, Family 32; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.916
chb
N,N'-diacetylchitobiase (chitobiase).
  
  
 0.910
CED70136.1
Putative beta-N-acetylhexosaminidase.
  
  
 0.910
exoI
Beta-hexosaminidase (beta-N-acetylglucosaminidase).
  
  
 0.910
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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