STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treATrehalose-6-phosphate hydrolase. (556 aa)    
Predicted Functional Partners:
treB
PTS system, trehalose-specific EIIBC component.
 
 
 0.987
crr
Glucose-specific phosphotransferase enzyme IIA component (PTS system).
  
 
 0.907
CED57707.1
PTS system, sucrose-specific EIIBC component.
 
  
 0.798
CED56996.1
Amino acid permease.
   
 0.672
CED56997.1
Amino acid permease.
   
 0.672
CED57708.1
Glycosyl hydrolase, Family 32; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.507
nagE
PTS system permease for N-acetylglucosamine and glucose.
  
  
 0.504
nagE-2
PTS permease for N-acetylglucosamine and glucose.
  
  
 0.504
ptsG
PTS system, glucose-specific EIIBC component [includes: glucose permease IIC component; glucose-specific phosphotransferase enzyme II component].
  
  
 0.504
CED57522.1
Putative alpha amylase; Similar to Sulfolobus acidocaldarius Glycogen debranching enzyme (Amylase) TreX UniProt:O05152 (713 aa) fasta scores: E()=3.7e-85, 38.576% id in 674 aa; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.493
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.