STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57218.1Putative extracellular solute-binding protein. (571 aa)    
Predicted Functional Partners:
CED57217.1
HTH-type transcriptional regulator, AraC family.
       0.537
mtlR
Mannitol operon repressor (mannitol repressor protein).
  
     0.475
CED71981.1
UPF0304 protein; Belongs to the UPF0304 family.
  
     0.453
CED72613.1
Putative membrane protein, AsmA family.
  
     0.451
CED57216.1
Putative exported protein.
       0.420
CED72572.1
Inner membrane protein.
  
     0.414
uspB
Universal stress protein B.
  
     0.411
CED72420.1
Opacity-associated protein A.
  
     0.401
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.