STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57242.1Membrane protein. (369 aa)    
Predicted Functional Partners:
CED57244.1
Putative secretion protein, HlyD family.
 
  
 0.946
CED57245.1
Outer membrane efflux protein.
 
   
 0.937
CED57243.1
Membrane protein.
    
0.895
CED56846.1
Nitroreductase.
  
  
 0.588
frp
NADPH-flavin oxidoreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.588
CED57241.1
Outer membrane protein, OmpA family.
       0.499
luxT-2
HTH-type transcriptional regulator LuxT.
       0.478
CED57606.1
ABC transporter ATP-binding protein.
  
  
 0.467
CED70518.1
ABC transporter, ATP-binding protein.
  
  
 0.467
CED71903.1
ABC transporter, ATP-binding protein.
  
  
 0.467
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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