STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57245.1Outer membrane efflux protein. (455 aa)    
Predicted Functional Partners:
CED57244.1
Putative secretion protein, HlyD family.
 
 
 0.981
CED72643.1
Putative multidrug transporter, HlyD family; Similar to Pseudomonas aeruginosa Multidrug transporter, membrane fusion protein MexA (PDB 1VF7), evalue=3e-21, identity=(80, 326); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.954
CED57242.1
Membrane protein.
 
   
 0.946
CED57243.1
Membrane protein.
 
   
 0.946
CED71749.1
Putative secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.945
CED72644.1
Putative integral membrane component of multidrug efflux system; Similar to Escherichia coli Acriflavine resistance protein F AcrF UniProt:P24181 (1034 aa) blastp scores: E()=0e-130; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.943
CED71748.1
Putative multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.940
CED57906.1
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.937
CED57905.1
Integral membrane protein, multidrug efflux pump.
  
 0.932
CED71236.1
Outer membrane efflux protein.
  
  
  0.915
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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