STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57310.1Putative uncharacterized protein. (96 aa)    
Predicted Functional Partners:
CED57309.1
Putative uncharacterized protein.
 
     0.948
CED57283.1
Putative uncharacterized protein.
 
     0.782
CED57302.1
Putative uncharacterized protein.
 
     0.782
CED57317.1
Putative uncharacterized protein.
 
     0.782
CED57331.1
Putative uncharacterized protein.
 
     0.782
CED71379.1
Putative RelB antitoxin.
  
 
 0.621
CED71294.1
Putative DNA-binding protein.
   
 
 0.545
CED57308.1
Putative uncharacterized protein.
       0.453
parD
ParD antitoxin protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.404
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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