STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57427.1Outer membrane protein, OmpA family. (1575 aa)    
Predicted Functional Partners:
CED57429.1
Putative uncharacterized protein.
       0.784
CED57428.1
Putative uncharacterized protein.
       0.777
CED56988.1
Putative exported protein.
  
     0.773
CED71236.1
Outer membrane efflux protein.
  
 
 0.769
CED57696.1
Putative exported protein.
 
 
   0.765
vtsC
Putative type VI secretion protein, periplasmic solute-binding protein VtsC.
  
     0.762
CED57773.1
Putative exported hemolysin.
  
 
   0.760
CED57687.1
Membrane protein.
  
     0.759
CED56820.1
Peptide transporter.
  
     0.756
CED56906.1
Secreted peptidase, family C25.
 
     0.756
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.