STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57441.1Response regulator. (278 aa)    
Predicted Functional Partners:
CED57442.1
Two component transcriptional regulator.
 
  
 0.977
CED71224.1
Membrane receptor, histidine kinase; Probably regulates genes involved in cell wall metabolism and genes involved in virulence.
 
 
 0.888
CED57444.1
Putative exported protein.
 
     0.813
CED57443.1
Putative uncharacterized protein.
       0.811
CED57445.1
ABC transporter, permease component.
 
     0.748
CED57446.1
ABC transporter, ATP-binding component.
       0.709
CED57447.1
Putative transcriptional regulator.
       0.655
CED71636.1
Sensor protein, GGDEF family.
     
 0.485
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.479
varS
Response regulator, histidine kinase VarS.
     
 0.412
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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