STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57442.1Two component transcriptional regulator. (353 aa)    
Predicted Functional Partners:
CED57441.1
Response regulator.
 
  
 0.975
CED71223.1
Transcriptional regulator, two-component response regulator.
 
  
 0.863
CED57443.1
Putative uncharacterized protein.
       0.839
CED57444.1
Putative exported protein.
 
     0.788
CED57445.1
ABC transporter, permease component.
       0.753
CED57446.1
ABC transporter, ATP-binding component.
       0.753
CED57447.1
Putative transcriptional regulator.
       0.708
CED71636.1
Sensor protein, GGDEF family.
  
 
 0.642
CED57868.1
ABC transporter, extracellular solute-binding protein.
   
   0.633
fbpA
iron(III) ABC transporter, periplasmic iron-compound-binding protein.
   
   0.633
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.