STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57470.1Putative uncharacterized protein. (626 aa)    
Predicted Functional Partners:
CED57468.1
Putative uncharacterized protein.
       0.633
phrA
Deoxyribodipyrimidine photo-lyase (photoreactivating enzyme); Belongs to the DNA photolyase family.
       0.618
CED57854.1
Membrane transport protein.
 
     0.552
CED72510.1
Putative uncharacterized protein.
  
     0.485
nhaB
Na(+)/H(+) antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family.
  
     0.436
CED72010.1
Membrane protein.
  
     0.436
CED70990.1
Putative lipoprotein.
  
     0.429
CED57467.1
Transcriptional regulator, sigma-54 interaction protein.
       0.426
rimJ
Ribosomal-protein-alanine acetyltransferase.
       0.421
CED57846.1
Putative twin-arginine translocation protein.
 
  
 0.417
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.