STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57476.1Putative uncharacterized protein. (243 aa)    
Predicted Functional Partners:
CED57475.1
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.996
CED57477.1
Amine oxidase.
 
  
 0.971
CED57479.1
Putative transcriptional regulator.
 
   
 0.964
CED57478.1
Putative short chain dehydrogenase.
 
  
 0.947
CED57472.1
Putative lipoprotein.
 
  
 0.937
CED57474.1
Membrane protein.
 
   
 0.862
CED57480.1
Putative transcriptional activator.
 
  
 0.852
CED57473.1
Putative uncharacterized protein; The CDS may be truncated at the N-terminus.
 
     0.730
CED57481.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.730
CED72529.1
MFS transporter.
 
  
 0.610
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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