STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57478.1Putative short chain dehydrogenase. (245 aa)    
Predicted Functional Partners:
CED57479.1
Putative transcriptional regulator.
 
   
 0.969
CED57477.1
Amine oxidase.
 
   
 0.949
CED57476.1
Putative uncharacterized protein.
 
  
 0.947
CED57472.1
Putative lipoprotein.
 
  
 0.936
CED57475.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.919
CED57474.1
Membrane protein.
 
   
 0.870
CED57473.1
Putative uncharacterized protein; The CDS may be truncated at the N-terminus.
 
     0.820
CED57480.1
Putative transcriptional activator.
 
   
 0.772
CED57481.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.685
CED70440.1
AMP-binding enzyme, putative long chain fatty acid Co-A ligase, acetyl-CoA synthetase.
   
 
 0.539
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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