STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadCBacterial type II secretion system protein F. (270 aa)    
Predicted Functional Partners:
tadA
Type II/IV secretion system protein, ATP binding domain; Similar to Actinomycetemcomitans TadA UniProt:Q9XC06 (426 aa) fasta scores: E()=1.3e-77, 53.318% id in 422 aa.
 
 
 0.997
tadB
Bacterial type II secretion system protein F.
 
  
 0.993
CED57502.1
Type II/III secretion system protein; Belongs to the bacterial secretin family.
 
 
 0.992
CED72283.1
Putative bacterial type II secretion system protein.
 
 
0.987
rcpC
Putative Flp pilus assembly protein.
  
 
 0.978
tadG
Membrane associated secretion system protein.
  
  
 0.913
tadE
Membrane associated secretion system protein.
  
  
 0.913
tadD
Putative secretion system protein.
  
  
 0.867
tadF
Membrane associated secretion system protein.
     
 0.857
CED57803.1
Response regulator.
   
    0.758
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.