STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57505.1Fimbrial protein, Flp/Fap pilin component. (71 aa)    
Predicted Functional Partners:
rcpC
Putative Flp pilus assembly protein.
  
  
 0.932
tadV
Type IV leader peptidase.
  
  
 0.843
CED57502.1
Type II/III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.819
CED57501.1
Putative lipoprotein.
       0.628
tadG
Membrane associated secretion system protein.
  
  
 0.620
tadE
Membrane associated secretion system protein.
  
  
 0.620
tadC
Bacterial type II secretion system protein F.
  
  
 0.592
tadB
Bacterial type II secretion system protein F.
  
  
 0.588
tadA
Type II/IV secretion system protein, ATP binding domain; Similar to Actinomycetemcomitans TadA UniProt:Q9XC06 (426 aa) fasta scores: E()=1.3e-77, 53.318% id in 422 aa.
  
  
 0.555
CED72283.1
Putative bacterial type II secretion system protein.
  
  
 0.486
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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