STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57544.1Ferric siderophore transport protein, utilization protein. (263 aa)    
Predicted Functional Partners:
CED57546.1
Ferric siderophore transport protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.869
CED57547.1
Ferric siderophore transport protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.857
CED57919.1
ABC transporter ATP-binding protein.
   
   0.853
CED57545.1
Ferric siderophore transport protein, ATP-binding component.
 
  
 0.849
CED57548.1
Ferric siderophore transport protein, siderophore-binding protein.
 
  
 0.784
CED72625.1
TagA-related metallopeptidase.
   
  
 0.481
huvB
Heme transporter protein HuvB, putative periplasmic binding protein.
 
    0.475
trpE
Anthranilate synthase component I.
  
  
 0.462
pabB
Para-aminobenzoate synthase component I.
  
  
 0.462
soxR
Redox-sensitive transcriptional activator SoxR.
  
     0.441
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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