STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
CED57548.1Ferric siderophore transport protein, siderophore-binding protein. (294 aa)    
Predicted Functional Partners:
CED57545.1
Ferric siderophore transport protein, ATP-binding component.
 
  
 0.990
CED57547.1
Ferric siderophore transport protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.990
CED57546.1
Ferric siderophore transport protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.989
CED57544.1
Ferric siderophore transport protein, utilization protein.
 
  
 0.785
pvuE
Ferric vibrioferrin transport ATP-binding protein PvuE.
 
  
 0.684
pvuB
Ferric vibrioferrin-binding periplasmic protein PvuB.
  
  
0.651
CED57481.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.620
uspA
Universal stress protein A.
      
 0.618
CED70341.1
Universal stress protein A.
      
 0.618
CED72356.1
Sigma-54 modulation protein.
      
 0.618
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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