STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57552.1CRISPR-associated protein, Csy1. (450 aa)    
Predicted Functional Partners:
CED57550.1
CRISPR-associated protein, Csy3.
 
 
 
 0.988
CED57553.1
CRISPR-associated helicase Cas3.
 
   
 0.973
CED57551.1
CRISPR-associated protein, Csy2.
 
   
 0.968
cas1
CRISPR associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.955
CED57549.1
CRISPR-associated protein, Csy4.
 
   
 0.951
CED57555.1
Putative transcriptional regulator.
       0.682
vtsC
Putative type VI secretion protein, periplasmic solute-binding protein VtsC.
  
     0.625
CED56906.1
Secreted peptidase, family C25.
  
     0.590
CED57427.1
Outer membrane protein, OmpA family.
  
     0.572
vtsB
Putative type VI secretion protein, MFS transporter VtsB.
  
     0.551
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.