STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57564.1Putative aldo-keto reductase. (350 aa)    
Predicted Functional Partners:
CED57016.1
Putative deacetylase.
   
  0.704
CED57563.1
Membrane protein.
       0.676
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.648
CED56785.1
Ankyrin repeat containing protein.
   
 0.587
CED56928.1
Exported serine protease, trypsin elastase.
    
   0.570
CED72503.1
Putative lipoprotein.
   
  0.564
vasL-2
Serine/threonine phosphoprotein phosphatase.
    
   0.535
CED57562.1
Putative exported protein.
       0.511
CED71710.1
Thiol/disulfide interchange protein.
    
 
 0.494
dsbE
Thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG).
    
 
 0.494
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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