STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57584.1Membrane protein. (400 aa)    
Predicted Functional Partners:
parB
Chromosome plasmid partition protein; Belongs to the ParB family.
  
     0.587
CED70990.1
Putative lipoprotein.
  
     0.574
CED72417.1
Putative DNA-binding protein.
  
     0.541
CED56987.1
Putative lipoprotein.
  
     0.540
CED56668.1
Putative exported protein.
  
     0.519
CED71817.1
Putative uncharacterized protein.
  
     0.438
CED71707.1
Putative acetyltransferase, GNAT family.
  
     0.432
CED72072.1
Putative porin.
  
     0.429
CED72067.1
Putative lipoprotein.
  
     0.416
CED57265.1
Fatty acid cis/trans isomerase.
  
     0.400
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.