STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57588.1HTH-type transcriptional regulator, AraC-family. (289 aa)    
Predicted Functional Partners:
CED57022.1
Putative HTH-type regulatory protein, AraC family.
 
     0.671
CED57589.1
Putative aminotransferase.
 
   
 0.647
CED56763.1
Transcriptional regulator, AraC family.
 
     0.628
CED71156.1
Transcriptional regulator, AraC-family.
 
     0.609
CED57217.1
HTH-type transcriptional regulator, AraC family.
 
     0.562
CED71142.1
Transcriptional regulator, AraC-family.
 
     0.552
rpoA
RNA polymerase alpha-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.477
ainR
Sensor protein AinR.
 
   
 0.457
CED57590.1
Zinc carboxypeptidase.
       0.446
CED70891.1
Transcriptional regulator, AraC family.
 
     0.444
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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