STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57602.1Putative secretion protein, HlyD family. (407 aa)    
Predicted Functional Partners:
CED71236.1
Outer membrane efflux protein.
 
 
 0.831
CED70950.1
MFS drug resistance transporter; Belongs to the major facilitator superfamily.
 
 
 0.795
CED57917.1
Outer membrane efflux protein.
  
 
 0.788
CED57601.1
Putative membrane protein.
       0.787
macB
ABC transporter, permease; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.717
CED57245.1
Outer membrane efflux protein.
 
 
 0.715
CED57919.1
ABC transporter ATP-binding protein.
  
 
 0.689
tolC
Outer membrane protein TolC precursor.
  
 
 0.673
CED71238.1
ABC transporter, permease protein.
 
  
 0.669
CED57395.1
Putative exported protein.
  
 
 0.666
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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