STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57606.1ABC transporter ATP-binding protein. (236 aa)    
Predicted Functional Partners:
CED57607.1
Membrane protein.
       0.839
CED70956.1
ABC transporter, ATP-binding protein.
 
   
 0.705
CED71188.1
ABC transporter ATP-binding protein.
 
   
 0.677
CED57446.1
ABC transporter, ATP-binding component.
 
   
 0.633
atpC
ATP synthase epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.585
atpD
ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.570
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
   
 0.557
CED70519.1
ABC transporter, integral membrane protein.
  
  
 0.544
CED72401.1
ABC transporter, ATP-binding protein.
 
   
 0.517
CED57605.1
Integral membrane protein.
   
   0.514
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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