STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57615.1Membrane protein. (245 aa)    
Predicted Functional Partners:
CED57616.1
Inner membrane protein.
 
  
 0.980
CED57617.1
Metallopeptidase.
 
     0.937
priC
Primosomal replication protein N''.
  
     0.609
dcuA
Anaerobic C4-dicarboxylate transporter DcuA; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
     0.583
CED70353.1
Membrane protein.
  
     0.581
dcuC
Anaerobic C4-dicarboxylate transporter DcuC.
  
     0.541
CED71136.1
Putative sodium/sulfate symporter.
  
     0.520
CED70704.1
Putative uncharacterized protein.
  
     0.519
CED70971.1
Putative regulator of competence-specific genes.
  
     0.511
CED72666.1
Putative uncharacterized protein.
  
     0.485
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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