STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vtsCPutative type VI secretion protein, periplasmic solute-binding protein VtsC. (380 aa)    
Predicted Functional Partners:
vtsB
Putative type VI secretion protein, MFS transporter VtsB.
 
     0.951
vtsA
Putative type VI secretion protein, D-alanine-D-alanine ligase VtsA; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
     0.932
vtsD
Putative type VI secretion protein, periplasmic solute-binding protein VtsD.
 
     0.929
vasC-1
Putative type VI secretion protein VasC-1.
 
     0.918
vtsI
Putative type VI secretion protein, ImcF-related VtsI.
 
     0.915
vasD-1
Putative type VI secretion protein VasD-1.
 
     0.872
vasF-1
Putative type VI secretion protein VasF-1.
 
     0.861
hcp-3
Hemolysin-coregulated protein Hcp-3.
 
     0.828
vasE-1
Putative type VI secretion protein VasE-1.
 
     0.814
vasB-1
Putative type VI secretion protein VasB-1.
 
     0.813
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.