STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vasA-1Putative type VI secretion protein VasA-1. (593 aa)    
Predicted Functional Partners:
vasRB-1
Putative type VI secretion protein VasRB-1.
 
  
 0.972
vasQ-1
Putative type VI secretion protein VasQ-1.
 
  
 0.957
vasB-1
Putative type VI secretion protein VasB-1.
 
  
 0.954
vasRB-1-2
Putative type VI secretion protein VasRA-1.
 
  
 0.953
vasF-1
Putative type VI secretion protein VasF-1.
 
  
 0.937
vasD-1
Putative type VI secretion protein VasD-1.
 
  
 0.914
vasE-1
Putative type VI secretion protein VasE-1.
 
  
 0.912
vtsI
Putative type VI secretion protein, ImcF-related VtsI.
 
  
 0.906
vasG-1
Chaperone ClpB-1; Belongs to the ClpA/ClpB family.
 
  
 0.900
vasC-1
Putative type VI secretion protein VasC-1.
 
  
 0.889
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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